3961 days ago
List of In-silico Binding Site Prediction Tools
...pockets on protein surface to predict ligand-binding sites. The ide...onto the protein structure to predict a ligand binding site. Sites...threading-based binding site prediction/protein functional inferen...e the quality of binding-site predictions. The performance of the p...3758 days ago
Binding Site Prediction in Protein !
...e include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the inter...nbsp;PyMOL Binding Site Prediction ConSurf Identifi...server utilizes protein-structure prediction to provide structural mode...2216 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...age-- SNP/Indel analysis, CNV prediction and disease discovery, who...Structural Variant Machine - predicts indels, uses split read alig...Perl, Python, and R versions; predicts liklihood of a gene being re...HapMap frequencies, PolyPhen predictions and clinical association....2922 days ago
Tools to Predict the Impact of Missense Variants !
...yed for the task of pathogenicity prediction, including PolyPhen‐2, SIF...neralize best, that is, correctly predict the pathogenic character of n...sults. Comparative evaluations of predictors that do not address these...ly deleterious” SIFT“Predicts whether an amino acid substi...2217 days ago
Protein-Protein Interaction Sites Predictions !
...g are the list of tools commonly used to PPIs predictions: Protein-Protein Interac...PPISP A consensus neural network method for predicting protein-protein interactio...on energy values PINUP Protein binding site prediction with an empirical scoring...2216 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches i...h molecular flexibility and conformational changes. Following are the tools to predict the structure of protein...2216 days ago
Ancestral sequence reconstruction steps !
...tein resurrection has developed as a strategy to reveal the mechanisms and dynamics of protein evolution. BEAST is the best way to predict the ancestral structure. but,...2193 days ago