2733 days ago
2699 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...and alignment complexity. We describe an algorithm that is up to 20 times faster and 25% more accurate than popular NGS alignment programs when processing mate pair sequencing. Availab...2693 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...ardo da Veiga Beltrame, Kristján Eldjárn Hjörleifsson, Jase Gehring & Lior Pachter† Modular and efficient pre-processing of single-cell RNA-seq, Natur...1120 days ago
2620 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...e Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume. You can...2540 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...d, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.Currently it supports processing data from HiSeq 2000/2500/300...2359 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...benefits: PLAST is a high-performance sequence comparison tool designed to compare two sets of sequences (query vs. reference), Reduces the processing time of sequences comparisons...2341 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main...2337 days ago
MUMmer4: A fast and versatile genome alignment system
...y changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing of input query sequences. Wit...2277 days ago