PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2951 days ago
2951 days ago
2914 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order...2914 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can...2907 days ago
2882 days ago
Linux command line exercises for NGS data processing
...ina Amplicons Processing Workflow. In Linux, we use a shell that is a program that takes your commands from...lize Bourne Again SHell (bash), but there are several additional shell programs on a typical Linux system su...2874 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...an ultrafast and highly accurate program for assigning taxonomic label...tagenomic DNA sequences. Previous programs designed for this task have...o use faster abundance estimation programs, which only classify small s...ter than the abundance estimation program MetaPhlAn. Kraken is availabl...2869 days ago
2869 days ago
2799 days ago