2641 days ago
2581 days ago
Enrichr: a comprehensive gene set enrichment analysis
...gene set libraries. New features have been added to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application programming interface and visualization o...2558 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...e of using diverse information sources. GRASS offers a mixed-integer programming formulation of the contig sca...ctation-maximization procedure and an unconstrained binary quadratic programming approximation of the original...2532 days ago
2498 days ago
2480 days ago
MOSS: A System for Detecting Software Similarity
...y) is an automatic system for determining the similarity of programs. To date, the main application of Moss has been in detecting plagiarism in programming classes. Since its developmen...2332 days ago
Computational Genomics: Applied Comparative Genomics
...a significant class project. There are no formal course prerequisites, although the course will require familiarity with UNIX scripting and/or programming to complete the assignments a...2342 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...aking the symbols from the given pair of sequences (protein or nucleotide) and results in an optimal alignment faster than conventional dymanic programming techniques. It is also better...2332 days ago
LRCstats: Long Read Correction Statistics
...lignment file and then aligning the corrected long reads (cLR) to the Ref-uLR two-way alignments to create three-way alignments using a dynamic programming algorithm. Statistics on thes...2305 days ago