Results for "pyrosequencing data"
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HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed...3005 days ago
- This is a collection of libraries and high-quality e...king with gene annotation, collecting data scores from a variety of mode...otation formats and the collection of data from multiple data files. The...ckage includes scripts for setting up databases of annotation, collectin...
2998 days ago
- Stacks is a software pipeline for building loci from short-read sequences, such as those gen...Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the pur...
2993 days ago
Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one...roducible analysis of chordate genome data. Ensembl computes pairwise an...istent informatics infrastructure and data presentation across all suppo...ines to produce reference comparative data and make it freely available....2989 days ago
- This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by...
2988 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
2988 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads t...Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to pro...
2979 days ago
- GA4GH Data Working Group Led by David Haussler (UCSC) and Richard Durbin (Sanger Institute), the Data Working Group (DWG) of the Gl...acy respecting and interoperable sharing of Genomic data. More at http://ga4gh.o...
2968 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute an...f transcriptomes from RNA-seq data. Trinity combines three indep...inity partitions the sequence data into many individual de Bruij...nchworm assembles the RNA-seq data into the unique sequences of...directory. Assemble RNA-Seq data like so: Trinity --seqType...2965 days ago
