IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore&rsq...ack at mike.smith@embl.de. If you’re not interested in the quality assement of the raw or event...2357 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...such as MHAP and DALIGNER. Coupled with long-read error correctors and consensus tools, miniasm may also be useful to produce high-quality assemblies. Minimap and mini...2353 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ol designed to compare two sets of sequences (query vs. reference), Reduces the processing time of sequences comparisons while providing highest quality results, Contains a fully in...2349 days ago
2340 days ago
Musket: a multistage k-mer spectrum based corrector
...spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de novo genome assembly m...2344 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...optimal alignment faster than conventional dymanic programming techniques. It is also better than the heuristic methods with respect to alignment quality.2342 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
...nbsp;in vitro techniques, supporting multiple existing formats via built-in converters creates an extensive report with several comparative quality metrics (both on assembly lev...2322 days ago
AliTV—interactive visualization of whole genome comparisons
...nd highly customizable interface allows rapid exploration and manipulation of the visualized data as well as the export of publication-ready high-quality figures. AliTV is freely avai...2309 days ago
mojolicious: a next generation web framework for the Perl programming language.
...) Fresh code based upon years of experience developing Catalyst, free and open source. Hundreds of 3rd party extensions and high quality spin-off projects like the&nb...2307 days ago
ARCS: scaffolding genome drafts with linked reads
...ld) Chromium data. We expect ARCS to have broad utility in harnessing the barcoding information contained in linked read data for connecting high-quality sequences in genome assembly...2254 days ago