Results for "query"
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RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome a...3031 days ago
- ...l to the phylogenetic distance between database match sequences and the query genome. These scores are usef...nors as well as recipients. The breadth of the database allows not only query sequences, but also their dat...
2895 days ago
- ...ssed this problem by creating Ribbon (genomeribbon.com) an interactive online visualization tool that displays alignments along both reference and query sequences, along with any ass...
2774 days ago
- ...erence chromosomes, ignoring: matches not satisfying cut-offs (--identity and --overlap) suboptimal matches (only best match of each query to reference is kept) and re...
2715 days ago
- ...WA-SW at finding the single best alignment per query and is dramatically faster an...ligners that report all, or one, alignment per query, or that use simple heuristic...ind the optimal set of alignments that cover a query using a biologically relevant...
2683 days ago
FSA: Fast Statistical Alignment
...alignments: FSA uses machine-learning techniques to estimate gap and substitution parameters on the fly for each set of input sequences. This "query-specific learning" alignment...2666 days ago
ERGO 2.0 Bioinformatics suites
ERGO 2.0 provides a systems biology informatics toolkit centered on comparative genomics to capture, query, and visualize sequenced genomes. Using Igenbio's proprietary algorit...2567 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level proc...2567 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is...2381 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...mparison tool providing the following benefits: PLAST is a high-performance sequence comparison tool designed to compare two sets of sequences (query vs. reference), Reduces the...2368 days ago
