Maq: Mapping and Assembly with Quality
...pping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq...l to the $PATH or to the same directory. Simulate diploid reference and read sequences, map reads, call va...2723 days ago
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BIMA V3: an aligner customized for mate pair library sequencing
...mal abnormalities. Unfortunately, the mapping and alignment of mate pair read pairs to a reference genome i...introduction of library preparation protocol artifacts (biotin junction reads, paired-end read contaminati...2701 days ago
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PBSuite: Software for Long-Read Sequencing Data from PacBio
...uite code found in downloads.----- PBJelly -----Read The Paper http://www.plo...automated pipeline that aligns long sequencing reads (such as PacBio RS reads or...upgraded draft genomes. ----- PBHoney -----Read The Paperhttp://www.biomedcen...2626 days ago