Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http...;). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads.An updated version called OP...2365 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...wski/nanocorr) specifically for Oxford Nanopore reads, as existing packages were incapable of assembling the long read lengths (5-50kbp) at such hig...urthermore, the assembly with the long nanopore reads presents a much more complet...2363 days ago
2363 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm target...ming substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model...2356 days ago
2354 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific...encing technology. The first step of NanoSim is read characterization, which provi...alignment-based analysis and generates a set of read profiles serving as the input...2344 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...eneration Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitali...with large datasets by utilizing lightweight data structures and multi-threaded parallelization, allowing t...2342 days ago
MeDuSa: a multi-draft based scaffolder
...equire either prior knowledge on the microrganisms dataset under analysis (e.g. their phylogenetic relationships) or the availability of paired end read libraries.2286 days ago
2335 days ago
Seal: SEquence ALignment evaluation suite
...to evaluate alignment algorithms, including: Reading a pre-existing reference g...t length, repeat variability rate). Simulating reads from random locations in the...he alignment tool and calculating the number of reads that were correctly or incor...2328 days ago