Results for "read depth"
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PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format wi...aximise the probability of the forward and reverse reads...2654 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...omatically via a simple GUI. Contig boundaries and read coverage can be displayed for...led sequence data. BRIG also accepts SAM-formatted read-...
2630 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variat...found in downloads.----- PBJelly -----Read The Paper http://www.plo...d pipeline that aligns long sequencing reads (such as PacBio RS reads or...draft genomes. ----- PBHoney -----Read...2619 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some...: default:Unmapped -e | --empty : generate EMPTY bams for chromosome having no read...2618 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ...ly from the genome being sequenced. Mapping reads to reference genomes makes u...e and quality for 454 and Illumina sequence reads...2617 days ago
- A computational pipeline for identifying single-base substitutions between two close...elated genomes without the help of a reference genome. DIAL works even when the depth of coverage is insufficient f...
2617 days ago
- COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end reads...
2611 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, an...2592 days ago
- JSON (JavaScript Object Notation) is a lightweight data-interchange format. It is easy for humans to read...
2583 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequenci...specially intended for PacBio reads. It uses a hybrid strategy,...ning that it uses two sets of reads: the reference read set, who.... Usually, errors in PacBio reads include many insertions and...2577 days ago
