Results for "reconstruct"
Bookmarks
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2956 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest versio...
2919 days ago
- ...00M reads. KisSplice is not a full-length transcriptome assembler. This means that it will output the variable regions of the transcripts, not reconstruct them entirely. KisSplice com...
2824 days ago
- ...total reads from a single experiment. This is enough information to reconstruct at least some of the differen...used. Results. We provide a new approach that allows researchers to reconstruct genomes very closely related...
2723 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of set...sibility to handle badly assembled genomes. DeCoSTAR is able to reconstruct the histories of domains insi...2583 days ago
CABOG: Celera Assembler with Best Overlap Graph
...st to overcome the fundamental limitation of all sequencing machines, namely, that they read out very few DNA letters at a time. These programs reconstruct genomes that are billions of...2552 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...are reasonably accurate and that they will become highly accurate in the foreseeable future. Our methods were developed as part of a project to reconstruct the genome sequence of the la...2549 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and ev...y or partially, in the latter case MGRA can reconstruct conserved ancestral regions (...o have different gene content. It also can reconstruct most plausible phylogenetic t...2481 days ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
...e a heuristic algorithm, called DUPCAR, for reconstructing ancestral genomic orders w...ncestor. Then a greedy algorithm is used to reconstruct the ancestral orders by conne...he algorithm. We also applied the method to reconstruct the ancestral chromosome X of...2180 days ago
RNA-seq Analysis Workshop Course Materials
...r which an RNAseq experiment is performed. It allows reads to be aligned against the reference genome and significantly improves our ability to reconstruct transcripts. This category wo...2138 days ago
