1517 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...m1 -M1 -O1,1,1,1 -E1,1,1,1 -w100 -b0 -e0.25 -d0.10 Output options: -r --max-out [INT] Maximum number of output records for a specific split read region. [10] -g --gap-split [INT] Mi...2119 days ago
Comment on "Running Trinity on RNA-seq !"
...sion analysis. Trinity provides direct support for several DE analysis methods, including edgeR, DESeq2, Limma/Voom, and ROTS. Extract coding regions using TransDecoder ...2120 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...mber of match bases in an anchor. [12] -e, --error-rate FLT Approximate error rate of the input read sequences. [0.45] -g, --max-regions INT If the final number of regions exceeds this amount, the rea...2289 days ago