Results for "repetitive"
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Junk part of the human genome unlocked
...NA is not stagnant as researchers originally had believed " Simple Quantitative PCR Approach to Reveal Naturally Occurring and Mutation-Induced Repetitive Sequence Variation on the Dro...3489 days ago
Resolving the complexity of the human genome using single-molecule sequencing
...close-gaps-chart-complexity-human-reference suggest a greater complexity of the human genome in the form of variation of longer and more complex repetitive DNA that can now be largely r...3214 days ago
- ...genomes from Sanger reads. In contrast, real genomes often have long repetitive regions, and they are hard to...d assembly approach was originally proposed to handle the assembly of repetitive regions better. More at ...
2686 days ago
CLA: Contig-Layout-Authenticator
...nsus draft. The CLA pipeline was designed and trained extensively on various bacterial genome datasets for the ordering and scaffolding of large repetitive contigs. The tool has been va...2550 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...ily distant and closely related species. Input formats, automated data upload from the UCSC Genome Browser, gene annotation, annotation of repetitive elements, and progress report...2474 days ago
RGFA: powerful and convenient handling of assembly graphs
...ph, to finish the assembly of a sequence, using information not available to the assembler. We illustrate a use case, in which the assembly of a repetitive metagenomic fosmid insert was...1560 days ago
- Tallymer is based on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the k-mer size. Tallymer can process large data sizes of s...
2264 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...gh. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow u...2018 days ago
URMAP, an ultra-fast read mapper
...recision 0.998, sensitivity 0.982 and F-measure 0.990) with the strelka2 caller. However, GIAB reference variants are shown to be biased against repetitive regions which are difficult t...1277 days ago
