Mugsy: multiple whole genome alignment tool
...ment-based progressive multiple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FASTA files and does not require a reference genome. To cite...2353 days ago
MeDuSa: a multi-draft based scaffolder
...on graphs and implements an efficient constant factor approximation algorithm to solve it. In contrast to currently used scaffolders, it does not require either prior knowledge on the...2286 days ago
mojolicious: a next generation web framework for the Perl programming language.
...portable and object-oriented pure-Perl API with no hidden magic and no requirements besides Perl 5.24.0 (versions as old as 5.10.1 can be used too, but may require additional CPAN modules to be...2318 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...of related organisms as references to more accurately order and orient the contigs of a draft genome. In practical usage, our Multi-CAR does not require prior knowledge concerning ph...2265 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
...s those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. A...2206 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...utosomal and sex-linked genes (genes located on the non recombining part of sex chromosomes). How does SEX-DETector work? SEX-DETector does not require prior sequencing of a referen...2180 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...gnment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes aligning one m...2188 days ago
2112 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accurate reads includ...2098 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
...ds offer a promising way to address this issue. However, so far long reads are characterized by a high error rate, and assembling from long reads require a high depth of coverage. Thi...2098 days ago