SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the scr...2624 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it f...can also assembly long-read-only sets (PacBio or Nanopore) where it runs a ...2377 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public seq...Availability and Implementation The software is implemented in Python 3 and runs in both...2372 days ago
2346 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny...nbsp;also automatically creates statistical summaries of the simulation as it runs includi...2348 days ago
2330 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, p.../packages.python.org/DendroPy/ Requirements and Installation DendroPy 4.x runs under P...2213 days ago
2099 days ago
MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
MimicrEE2, a multi-threaded Java program for genome-wide forward simulations of evolving populations. MimicrEE2...daptive models (selective sweeps, polygenic adaptation, epistasis). MimicrEE2 runs on any...2054 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciproca...ted by the first run of Synima – and can be subsequently edited. Synima runs quickly...2022 days ago