Results for "samples"
Bio-Scripts
...tionary keys in sample_links. extract them to a list we can use below SAMPLES=sample_links.keys() # down...: input: expand("rnaseq/raw_data/{sample}.fq.gz", sample=SAMPLES) # rule to download each i...1531 days ago
- ...mines the baseline contig ploidy for germline samples given counts data Germli...Tool) Calls copy-number variants in germline samples given their counts and the ou...erless BAM shard into a readable BAM DownsampleSam (Picard)...
2090 days ago
- ...for the filter field, quality and non-indels vcf-stats file.vcf.gz -f FILTER,QUAL=10:200,INFO/INDEL=False -p out/ # Calculate stats for all samples vcf-stats file.vcf.gz -f FORM...
1540 days ago
Perl script to parse VCF file !
#!/usr/bin/perl use strict; use warnings; # Usage: ./parse_vcf.pl input.vcf die "Usage: ./parse_vcf.pl input.vcf\n" unless @ARGV; my $vcf_file = shift @ARG...109 days ago
