Results for "scaffolding"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...TransPS 1.1.0 – Transcriptome Post Scaffolding TransPS is a pipeline for...tructed contigs to more completeness ones.2.Scaffolding. We use paired-end reads to c...tion ScaffoldScaffolder is a stand-alone scaffolding algorithm which was designed...2679 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...onsensus (OLC) approach without the necessity of an error correction stage (uses minimap) Software (C) https://github.com/lh3/miniasm LINKS Scaffolding genome assembly with error-co...2365 days ago
Some useful Bioinformatics links
...stitute.github.io/picard/command-line-overview.html Chromosome-scale scaffolding of de novo genome assemblies...cleotide sequences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding bacterial draft genomes using...2235 days ago
- ...True, nogapclosing=True, norearrangements=False, noreduction=True, noscaffolding=True, outdir='test/run1', ove...###########################################[Mon May 7 11:29:29 2018] Scaffolding... iteration 1.1: test/run1/c...
2184 days ago
Gap filling or Contigs extensions tools !
...omebiology.com/2010/11/4/R41 Also SOAPdenovo has ha function for scaffolding. Not sure about ABYSS Here...ation of several tools. https://bioinformaticsonline.com/search?q=scaffolding&entity_type=object&en...2159 days ago
LINKS scaffolder bloomfilter setting !
...aximum link ratio between two best contig pairs (default -a 0.3, optional) *higher values lead to least accurate scaffolding* -z minimum contig length to consider for scaffolding (default -z 500, optional) -...2145 days ago
