NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...spanning (complex) structural variations. Ngmlr uses an SV aware k-mer search to find approximate mapping l...position of breakpoints stemming from structural variations. The k-mer search helps to detect and split rea...2196 days ago
2160 days ago
gSearch: a fast and flexible general search tool for whole-genome sequencing
gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a multi-threaded manner.2092 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provi...1980 days ago
RepeatMasker compatible blast tool
...use with RepeatMasker and RepeatModeler. RMBlast supports RepeatMasker searches by adding a few necessary f...ity adjusted scoring. Cross_match is Phil Green's seeded smith-waterman search algorithm. Support for cross...1970 days ago
BLAST options, setting and defaults
...stands for Basic Local Alignment Search Tool and was developed by Alt...l. (1997). It is a very fast search algorithm that is used to sep...best used for sequence similarity searching, rather than for motif sea...LAST, and may be useful for motif searching, is FASTA. To search...1967 days ago
Quick tour of Genetic Algorithms !
...eral purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing genetic algorithms search in both the continuous and di...1929 days ago
1925 days ago
The Extensive de novo TE Annotator (EDTA)
...false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckm...1726 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
MitoZ is a Python3-based toolkit which aims to automatically filter pair-end raw data (fastq files), assemble genome, search for mitogenome sequences from the genome assembly result,...1557 days ago