Results for "seq"
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...ge for the mapping of short reads from illumina sequencing machines onto a refere...r most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq....in the mapping of reads containing that contain sequence variation relative to th...2904 days ago
- ...ation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its...lso target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can d...
2891 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences sequencing machines. Publication...eads using de Bruijn graphs. Accepted to RECOMB-Seq 2016. Download: LoRMA 0...
2164 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels an...
2817 days ago
- ...reach state-of-the-art performance across a wide range of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised training and subsequently generates ab initio gen...
1949 days ago
- Motif based sequence analysis suits The MEME S...ns of unaligned nucleotide or protein sequences, and to perform a wide...ased analysis of DNA, RNA and protein sequences. It provides motif disc...EME Suite provides tools for scanning sequences for matches to motifs (...
2688 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
...rix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data from n...rous technologies such as 10x, inDrops, and Dropseq. Customize workflows for new...rb-seq. Obtain QC reports from single-cell RNA-seq data The kallisto | b...1124 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...for DNA-, RNA-, and small-RNA-Seq. Strand Life Sciences announ...challenges in next generation sequencing (NGS). The first them...for DNA-, RNA- and small-RNA-Seq. UMI support in Strand NGS is...using genomics. By enhancing sequence-based diagnostics and cl...2384 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to d...2571 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it repre......To know that you have to align the sequences to the reference sequen...uence but sometimes, a library of EST sequences is used.In either way,...
2558 days ago
