Results for "sequence analysis"
Top-level pages
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience...2292 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mo...e file } For example,$ awk 'BEGIN{print "Header,Sequence"}{print $1","$2;}END{print "-------"}' data/test.tsvHeader,Sequence...2291 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact...nerated increasing interest in developing new methods for their computational analysis. Following are the list of...2285 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to...very intuitive workflow for the analysis and visualization of RNA-Seq...gnment, Differential expression analysis, Splicing events and gene fus...pports large scale RNA-Seq data analysis too. The tool also supports b...2275 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about a...libraries. Professionally, Python is great for backend web development, data analysis, artificial intelligence, and...2266 days ago
Some useful Bioinformatics links
...the distance between multiple sequence alignments | Bioinformatics |...Eval: A software package for analysis of genome annotations | BMC B....gov/pmc/articles/PMC3921174/ sequence - download.tardigrades.org &g...an/Mail/view Tetra-Nucleotide Analysis (TNA) | BIOiPLUG Help center...2253 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n...> 0) print sum / n; }' To get sequence length for all sequences in a fasta file: awk '/^>...pigz: pigz *.fastq To count all sequences in a fasta file: grep "^>...ple only 200 first bases from all sequence...
2228 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge...Evaluation of the disease‐causing potential of DNA sequence alterations” MutationA...highly conserved amino acids within protein‐coding sequence...2214 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, medicine and the pharmaceutica...faces using an empirical model ISIS Prediction of interaction hotspots from sequence...2213 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also known as ancestral gene/sequence reconstruction/resurrection – is a technique used in the study of molecular evolution...2190 days ago
