Results for "sequences"
Bookmarks
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it p...s). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER,...2922 days ago
- ...volutionized biological research, however, while the number of sequenced genomes grows by the day, quality assessment of the resulting assembled sequences remains complicated and mostl...
2915 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types...mming tasks by finding the adapter or primer sequences in an error-tolerant way. It...fy and filter reads in various ways. Adapter sequences can contain IUPAC wildcard ch...
2912 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest versi...
2912 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require any...2912 days ago
- ...ches from a reference database of amino acid sequences, then using these matches to...phylogenetic distance between database match sequences and the query genome. These s...readth of the database allows not only query sequences, but also their database matc...
2872 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and c...2866 days ago
- ...ing it to a reference database containing microbial and viral protein sequences. By default, Kaiju uses eith...ngi and microbial eukaryotes. Kaiju translates reads into amino acid sequences, which are then searched in t...
2866 days ago
- ...reengenes can assist the researcher in choosing phylogenetically specific probes, interpreting microarray results, and aligning/annotating novel sequences. If you are an ARB user, you...
2864 days ago
Bioinformatics tools and software
...sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity measur...2858 days ago
