Results for "sequences"
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...tigs, and ii) the small_contig_inserter, which inserts the small contigs within scaffolds buildfasta converts the scaffold(s) map(s) into Fasta sequences.2851 days ago
- ...Wig, BED, GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblies. It’s not a program for aligning sequences to reference genome. We ...
2797 days ago
- We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".
2814 days ago
GeneValidator - Identify problems with predicted genes
...results produced can be used by biocurators and researchers who need accurate gene predictions. If you would like to use GeneValidator on a few sequences, see our online GeneVali...2807 days ago
- ...FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA sequences) methods will be employed in...
2807 days ago
- ...plication for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify a...and to explore conservation of synteny, in the context of the entire sequences and their annotation. It...
2795 days ago
BLAST Ring Image Generator (BRIG)
...Forge page: http://sourceforge.net/tracker/?group_id=328245. Features: Images show similarity between a central reference sequence and other sequences as concentric rings. BRIG wi...2771 days ago
- ...rter read lengths than previous technologies. Methods for classifying sequences as short as 100 base pairs (b...uses interpolated Markov models (IMMs) to taxonomically classify DNA sequences, can accurately classify read...
2761 days ago
- ...s problem by creating Ribbon (genomeribbon.com) an interactive online visualization tool that displays alignments along both reference and query sequences, along with any associated va...
2751 days ago
- ...that wrap and connect bioinformatics tools in order to extract target sequences from high-throughput DNA sequ...is a technique for sequencing many loci simultaneously based on bait sequences. HybPiper pipeline starts wit...
2737 days ago
