1968 days ago
2690 days ago
Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of bi...2688 days ago
2687 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...Metagenomic Version: Prodigal can run in metagenomic mode and analyze sequences even when the organism is unk...tep on a single genomic sequence or on a draft genome containing many sequences. It does not need to be suppl...2681 days ago
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2656 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate alignment software for short and long nucleotide sequences produced by next-generation sequencing te...2587 days ago
FSA: Fast Statistical Alignment
...h to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylo...scale problems such as aligning thousands of sequences or megabase-long sequences. F...parameters on the fly for each set of input sequences. This "query-specific learnin...2642 days ago