LoRDEC: a hybrid error correction program for long, PacBio reads
...f all these types. After correction, a larger portion of the sequence of PacBio reads is usable for detection of region of similarity with other sequences, for aligning them to the con...2594 days ago
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NCBI Prokaryotic Genome Annotation Pipeline
...s other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile...2558 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...ts a comparable number of scaffolds, but makes fewer errors. This result is further improved when additional data, in the form of related genome sequences, are used.2551 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce...2550 days ago
Genome Annotation Transfer Utility (GATU)
...atically annotate the new strain using a previously-annotated strain of SARS CoV. This saves researchers from tedious manual annotation of these sequences. The program utilizes tBLAST...2545 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...y and efficiency. The method is also useful for retrospective assessments of horizontal transfer prediction reliability, recognizing orthologous sequences that may have been previously...2521 days ago
I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec2510 days ago