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Results for "sequences"

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• • Rahul Nayak@rahul

  

  Extract sequences by their ID from a fasta file. perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.txt sample1.fa #Extract #Sequences #IDs #Fasta #Perl #Trick #Oneliner

  Tags: Extract, Sequences, IDs, Fasta, Perl, Trick, Oneliner

  3173 days ago

• • Poonam Mahapatra@poonam

  

  https://www.ncbi.nlm.nih.gov/Class/NAWBIS/Modules/Phylogenetics/phylo12.html #P-distance #Distance #Calculation #Sequences #Align

  Tags: P, Distance, Calculation, Sequences, Align

  2224 days ago

• • Jit@jit.aber

  

  Extract sequence by ids $ xargs samtools faidx Adineta_vaga.v2.pep.fa < AlienIds > allAlienSeq.fa #Extract #Ids #Sequences

  Tags: Extract, Ids, Sequences

  1978 days ago

• • Jit@jit.aber

  

  DSP analysis of DNA sequences http://www.bioprotection.org/articles/DNA-37.pdf #DSP #DNA #Analysis #Sequences #Scoring

  Tags: DSP, DNA, Analysis, Sequences, Scoring

  1668 days ago

• • Jit@jit.aber

  

  #Mappy provides a convenient #interface to #minimap2, a fast and accurate #C program to #align #genomic and transcribe nucleotide #sequences. https://pypi.org/project/mappy/

  Tags: Mappy, interface, minimap2, C, align, genomic, sequences

  2054 days ago