QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often.... However, there is enough information in the reads to correct most of the sequencing errors, thus making subsequen...2381 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxo...2366 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
...pseed takes as input alignments files of long reads to sparse short seeds, and outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to these. https...2366 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB por...anipulate, organize, summarize and visualize MinION nanopore sequencing data. As a package for R, poR...2366 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
.... It includes a functions to generate a number plots for examining the statistics that we think will be useful for this task. However, nanopore sequencing is an emerging and rapidly de...2366 days ago
coursera genome assembly tutorial
Solutions to Coursera Genome Sequencing (Bioinformatics II)2364 days ago
Opera: An optimal genome scaffolding program
...rg/wiki/Sequence_assembly ). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads.An updated version call...2362 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2362 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models...ling software. By default, observations only incorporate noise due to sequencing and do not incorporate effect...2361 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several decades. Recently, a nanopore-based sequencing instrument, the Oxford Nanopore MinION, h...2360 days ago