LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses tw...2593 days ago
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2570 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline...2568 days ago
CABOG: Celera Assembler with Best Overlap Graph
...has been a critical component of many genome sequencing projects. CABOG operates on s...o overcome the fundamental limitation of all sequencing machines, namely, that they r...o combine reads from first-generation Sanger sequencing machines and second-generatio...2558 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS is a tool able to merge two or more assemblies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its...2554 days ago
Pollux: platform independent error correction of single and mixed genomes
...at corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be appli...homopolymer errors while remaining sensitive to low coverage areas of sequencing projects. Using published dat...2554 days ago
2553 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluste...2550 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer...2550 days ago