SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...ssembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easi...2550 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known refer...2549 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
..., proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger,...f bioinformatic tools under specific hypothesis, e.g. with or without sequencing errors, or with low or high c...2549 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262533 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...agnostic to alignment parameters. Consistently very high sensitivity and precision across different error profiles, rates and sequencing technologies even with defaul...2535 days ago
GeneProf: analysis of high-throughput sequencing experiment
...users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis f...resource of fully analyzed next-generation sequencing data. Experimental results ca...2506 days ago
2502 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...d is currently implemented in all free and commercial bioinformatics packages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques, the utility of tr...2487 days ago
2486 days ago
Web Apollo: a web-based genomic annotation editing platform
...omic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researcher...2484 days ago