Tags: Genome Browser, Organism, Plant, Animal, Bacteria, fungi, Genome Sequence, DNA, Sequencing, Annotation, SNP, gff, gtf, gff3, vcf, bed
3921 days ago
Tags: Sequencing, gene expression, differential expression, transcription, UTRs, Animal, plant and virus miRNA
3502 days ago
Tags: pathway enrichment, kegg, reactome, go, blast2go, RNA-Seq, RNA, Sequencing
3502 days ago
Tags: Genetics, disease, disorder, DNA, lifestyle, fitness, health, genetics test, DNA test, sequencing
3926 days ago
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from...Tags: bam, sff, sam, iontorrent data, 454 data, pyrosequencing data, hxd, hexadecimal, binary files, sequencing
3926 days ago
Bioinformatics and Sequencing Courses and Workshops
Swiss Institute of Bioinformatics (SIB) organises lots of bioinformatics courses covering wide range of topics: http://www.isb-sib.ch/education/training-courses.html Canadian bioinformatics also organises various bioinformatics and sequencing courses: http://bioinformatics.ca/workshops In add...Tags: bioinformatics, sequencing, metabolomics, proteomics, markov model, genomics, courses
3913 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances from reference sequences and RNA-seq data (k-...Tags: Alignment-free, sequence, comparison, tools, next-generation, sequencing, analysis
2377 days ago