Results for "short reads mapping"
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CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targe...ames Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage...p), G = Haploid genome size (bp), and N = Number of reads....2179 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads w...
2887 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform....ain characteristics. A5-miseq will likely not work well with Illumina reads shorter than around 80nt, or reads w...
2831 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. pro...chromatin folding and affect gene expression levels. Genomic technologies for mapping interactions between DNA regi...
2882 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequ...t BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads p...2882 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a tax...microbial eukaryotes. Kaiju translates reads into amino acid sequences, wh...The search can process up to millions of reads p...
2882 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing micr...rk with hundreds of samples containing hundreds of millions of sequencing reads....
2855 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural...ations in sequencing depth, read lengths and mixtures of paired and single-end reads....
2812 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open sourc...to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about ge...
2832 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It i...ch condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads....
2832 days ago
