BOL

Results for "short reads mapping"

Wire posts

• • Jit@jit.aber

  

  Get the reads in fastq file: awk '{s++}END{print s/4}' file.fastq #reads #count #ngs #fastq

  2390 days ago

• • Jit@jit.aber

  

  #Error filtering, pair assembly and error #correction for next-generation sequencing #reads https://academic.oup.com/bioinformatics/article/31/21/3476/194979

  2363 days ago

• • Neelam Jha@neelam

  

  Store all files in a array using perl: my @filesbwa = <$base_name/reads/$base_name.$library.bwa.*fa> #Store #Keep #Array #Perl

  2363 days ago

• • Poonam Mahapatra@poonam

  

  Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

  2335 days ago

• • Rahul Agarwal@raag

  

  Nice Short Review-Disease Biomarkers for Precision Medicine: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414969/ #Omics #Cancer #PrecisionMedice

  2334 days ago

• • Jit@jit.aber

  

  interleave fastq files https://gist.github.com/nathanhaigh/4544979 #interleave #fastq #pair #ngs #reads

  2330 days ago

• • Jit@jit.aber

  

  Harness PacBio reads with assemblers https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome-Assembly-with-PacBio-Long-Reads #Reads #Assemblers #PacBio

  2291 days ago

• • Jit@jit.aber

  

  reformat.sh in=reads.fq out=highQuality.fq maq=16 (that will throw away all reads with average quality below 16) #Filter #BBMap #Quality

  2179 days ago

• • Jit@jit.aber

  

  #Short #read #alignment: an #introduction https://www.sevenbridges.com/short-read-alignment-algorithms/

  2195 days ago

• • Jit@jit.aber

  

  Long read extraction https://github.com/rrwick/Unicycler/wiki/Read-extraction #Reads #Extractions #Long #PacBio #Ont

  2127 days ago

• « Previous
• 1
• 2
• 3
• 4
• 5
• 6
• 7
• Next »