Results for "simulate"
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...(queue, ofp): # Try without this random.seed() while True: i = queue.get() if i == 'FINISHED': return # simulate an expensive function...1143 days ago
- ...reads from a reference genome. It is able to simulate diploid genomes with SNPs and...insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substituti...ulating INDEL polymorphisms.Wgsim outputs the simulated polymorphisms, and writes th...
2877 days ago
- ...tion tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimickin...files summarized from large recalibrated sequencing data. ART can also simulate reads using user own read err...
2744 days ago
Maq: Mapping and Assembly with Quality
...genome. Download maq, maq-data and maqview at the download page. Copy maq, maq.pl and maq_eval.pl to the $PATH or to the same directory. Simulate diploid reference and read se...2725 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC a...2344 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
...ion and genome structures and trait genetic architectures. It provides flexible parameter settings for a wide discipline of users, especially can simulate multiple genetically correlat...2304 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
RestrictionDigest can simulate the reference genome digestion and generate comprehensive information of the simulation. It can simulate single-enzyme digestion, doub...2158 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, v...1872 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
jackalope simply and efficiently simulates (i) variants from reference genomes and (...er read reference genomes from FASTA files or simulate new ones. Genomic variants ca..., and demographic fluctuations. jackalope can simulate single, paired-end, or mate-p...1750 days ago
GROMACS: a versatile package to perform molecular dynamics
GROMACS is a versatile package to perform molecular dynamics, i.e simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GROMACS is able to work...1372 days ago
