Results for "simulated"
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Bioinformatics Algorithm Demonstrations and Tutorials
...matching), Hierarchical Clustering (used in phylogenetic studies and microarray analysis of gene expression), a Naive Bayes Classifier for simulated microarray gene expressi...3717 days ago
- ...ing errors. It does not generate INDEL sequencing errors, but this can be partly compensated by simulating INDEL polymorphisms.Wgsim outputs the simulated polymorphisms, and writes the...
2886 days ago
- ...features are essential for studying genome evolution, and help to choose parameters for downstream analysis. We demonstrate its accuracy on 324 simulated and 16 real datasets with a w...
2359 days ago
- ...ed genome and has a full coverage. In this paper, we describe our approach and test its implementation called RECORD. We evaluate RECORD on both simulated and real data. We made our so...
2731 days ago
- ...match of each query to reference is kept) and removing overlapping matches on reference. In preliminary tests, pyScaf performed superbly on simulated heterozygous genomes based on...
2707 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...e genome shotgun (WGS) sequencing data. They also show applicability of the method for variant calling and allele dosage estimation. Results for simulated and real datasets are discuss...2640 days ago
CLA: Contig-Layout-Authenticator
...of large repetitive contigs. The tool has been validated and compared favorably with other widely-used scaffolding and ordering tools using both simulated and real sequence datasets. C...2570 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...transcriptomic, proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger, 454, Illumina. These simulated datasets can be used to test...2551 days ago
- ...Here we present OrthoGNC, a software for accurately predicting pairwise orthology relations based on gene neighborhood conservation. Analyses on simulated and real data reveal the high...
2377 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...ous statistical validation, and its friendly graphical interface allows interactive visualization of the results. We tested the software on both simulated and biological realistic data...2373 days ago
