Results for "single-molecule physical genome mapping"
Bookmarks
Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...ge plots (TAGC plots) to visualise the contents of genome...2897 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assem...assembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome...
2896 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targe...nstructions: set the read length/configuration and genome size, then select what you wa...C = Coverage (X),L = Read length (bp), G = Haploid genome...2180 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...e a lineage probability index (LPI) score for each genome...
2888 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is...rucial for genetic innovation and the evolution of genome architecture. Existing HGT de...estral (vertically derived) genes in its recipient genome....
2888 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uni...
2887 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g....ne expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide maps of interactions betw...
2883 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bio...sks like performing upper-quantile normalization on expression data or convert genome...
2881 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than...himeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes...2875 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome...
2867 days ago
