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The BLAST+ 2.10.0 release is now available from at FTP site. The new version offers the following improvements: updated composition-based statistics for protein-protein (including translated BLAST) comparisons to provide stable results when you request fewer than the default number ...Tags: BLAST+ 2.10.0, release, available, FTP, site, version, offers, improvements, BLAST, blast
1595 days ago
SEASTAR: Systematic Evaluation of Alternative STArt site in RNA
SEASTAR (Systematic Evaluation of Alternative STArt site in RNA) is a software package for Transcription Start Site (TSS) identification and quantification using only RNA-seq data. It assembles novel TSSs based only on RNA-Seq data and merges them with known TSSs from a public database. This pack...Tags: SEASTAR, Systematic, Evaluation, Alternative, STArt, site, RNA
1356 days ago
BLAST+ 2.11.0 release is now available on FTP site !
BLAST+ 2.11.0 release is now available from our FTP site. The main advance is the ability to provide usage reports to NCBI to help us improve BLAST. This information is limited to the name of the BLAST program, some basic database metadata, a few BLAST parameters, as well the number and total siz...Tags: BLAST, 2.11.0, release, available, FTP, site
1263 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the intermolecular complex formed between two or more m...Tags: Binding, Site, Prediction, Protein, Bioinformatics, Interactions, Structure, Ligand, Bind, Tools, Server
2198 days ago
SISRS: Site Identification from Short Read Sequences
Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads must have a fastq file extension.Tags: SISRS, Site, Identification, Short, Read, Sequences
1980 days ago
New Layout for BLAST ftp Database Site
As announced previously, the new default database version for BLAST+ is dbV5. To complete this transition, the ftp database site will be updated to support this change. We expect this change to happen around February 4th, please adjust your scripts or procedur...Tags: New, Layout, BLAST, ftp, Database, Site
1561 days ago
