2920 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...ures. The run-time for aligning two bird-size genomes (~1.2 Gb) is around two days on 24 CPUs. You can find the manual here. Download the latest source code from here. Stable versio...2917 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can...2909 days ago
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CovCal: Coverage / Read Count Calculator
...ge is calculated as C=LN/G and reads as N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of reads. Source code on GitHub.2169 days ago
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