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Many-Core Engine (MCE) for Perl example
...ions; :manager, :worker, and :getter. REQUIREMENTS Perl 5.8.0 or later. PDL::IO::Storable is required in scripts running PDL. SOURCE AND FURTHER READING The source, cookbook, and examples are h...2655 days ago
TMAP - torrent mapping alignment program General Notes
...st TMAP is unsupported. To use a supported version, please see the TMAP version associated with a Torrent Suite release below. Get the latest source code: git clone git://gith...2593 days ago
- ...ther utilities, how to debug Perl 6 programs, and how to hack on Perl 6 source code. The Perl 6 homepage offers a comprehensive list of Perl 6 resources, including tutorials, how-to...
2652 days ago
- ...equence variantsHTSlibA C library for reading/writing high-throughput sequencing data Samtools and BCFtools both use HTSlib internally, but these source packages contain their own co...
2611 days ago
Pacbio Long Reads Compatible Software and Tools
...io's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non-c...A separate page lists commercial software. Know of any other open source software for PacBio data?&nbs...2611 days ago
WGS Celera Assembler version 8.3rc2
...e pre-compiled binary distributions ready for installation.The source code package includes full source code (revision 4627), Makefil...Full documentation can be found online at http://wgs-assembler.sourceforge.net/. Interesting scrip...2586 days ago
- This tutorial will serve as an example of how to use free and open-source genome assembly and secondary scaffolding tools to generate high quality assemblies of bacterial sequenc...
2561 days ago
CABOG: Celera Assembler with Best Overlap Graph
...or the 2001 publication of the first draft human genome sequence. The software was released to the public domain in 2004. Its open source repository on Source Forge is an internet resource...2551 days ago
- ...to a complete genome is typically a time and resource intensive task. The advent of...., in submission). The executables (as well as source code) for these tools are fre...a pipeline written in the AMOS framework (open-source assembly tools) to merge arbi...
2545 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...ticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely dow...2543 days ago
