Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating s...2350 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
...n stage uses the model built in the previous step to produce in silico reads for a given reference genome. NanoSim is written in Python and R. The source files and manual are availabl...2344 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
...available in "allele-specific" mode) snakePipes can be installed via conda : 'conda install -c mpi-ie -c bioconda -c conda-forge snakePipes'. Source code (https://github.com/maxp...1816 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produ...2326 days ago
2324 days ago
mojolicious: a next generation web framework for the Perl programming language.
...d too, but may require additional CPAN modules to be installed) Fresh code based upon years of experience developing Catalyst, free and open source. Hundreds of 3rd party ...2319 days ago
2312 days ago
Alfred: BAM Statistics and Feature Counting
...est way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfred dependencies are incl...2308 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a s...2293 days ago
Circoletto: visualizing sequence similarity with Circos
...ically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (source code in PERL) freely availabl...2291 days ago