Jit
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snakepipes: A toolkit based on snakemake and python for analysis of NGS data
By Jit 1796 days ago
https://github.com/maxplanck-ie/snakepipes
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data.
- DNA-mapping*
- ChIP-seq*
- RNA-seq*
- ATAC-seq*
- scRNA-seq
- Hi-C
- Whole Genome Bisulfite Seq/WGBS
(*Also available in "allele-specific" mode)
snakePipes can be installed via conda :
'conda install -c mpi-ie -c bioconda -c conda-forge snakePipes'.
Source code (https://github.com/maxplanck-ie/snakepipes) and documentation (https://snakepipes.readthedocs.io/en/latest/) are available online.
