Results for "splice"
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....nih.gov/pubmed/26109056), and recursive clipping of mismatches near the edges of the reads, which avoids accumulating artefactual mismatches near splice sites and is needed to distin...2328 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...nomic reads ./minimap2 -ax sr ref.fa read1.fa read2.fa > aln.sam # short genomic paired-end reads ./minimap2 -ax splice ref.fa rna-reads.fa > aln.sam # spliced long reads ./minimap2 -ax s...2153 days ago
- ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled tran...on-exon boundaries to detect transcript isoforms, which are reported as splice graphs in dot output format.
2140 days ago
- ....nih.gov/pubmed/26109056), and recursive clipping of mismatches near the edges of the reads, which avoids accumulating artefactual mismatches near splice sites and is needed to distin...
2097 days ago
StringTie Transcript assembly and quantification for RNA-Seq
...ork flow algorithm as well as an optional de novo assembly step to assemble and quantitate full-length transcripts representing multiple splice variants for each gene locus....1433 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBan...140 nucleotides around each splice site have been extracted. Aft...). HS3D, a Dataset of Homo Sapiens Splice Regions, and its Extraction P...1429 days ago
