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Results for "splice"

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• • Rahul Nayak@rahul

  

  ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

  ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de novo assembled RNA-seq data with the help of a Bloom filter that represents the k...

  Tags: ChopStitch, exon, annotation, splice, graph, transcriptome, assembly, whole, genome, sequencing

  2126 days ago

• • Jit@jit.aber

  

  HS3D: Homo Sapiens Splice Sites Dataset

  HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBank Rel.123. The aim of this data set is to give standardized material to train and to assess the prediction accuracy of computational approaches for gene identification and c...

  Tags: HS3D, Homo, Sapiens, Splice, Sites, Dataset, Human

  1415 days ago