BOL: Results for "split reads"

Results for "split reads"

- Jit@jit.aber
Split the text file with line number in Linux: wc -l abc.txt and then: split -l 60000 abc.txt #Split #Break #Line #Ubuntu #Linux #Tricks
2779 days ago
- Shruti Paniwala@shruti
Slice on the fly with perl: my ($username, $real_name) = (split /:/, $str)[0, 4]; #Perl #PerlTrick #Split
2746 days ago
- Jit@jit.aber
Split the bam file by chromosome. $ bamtools split -in file.bam -reference #Split #Bam #Bamtools
2621 days ago
- Jit@jit.aber
Pacbio pipeline http://www.cbcb.umd.edu/software/PBcR/ #Pacbio #Reads #Pipeline
2605 days ago
- Jit@jit.aber
Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern
2499 days ago
- Jit@jit.aber
Split the file in Linux with size. $ split --bytes=50M aaaa.fa #split #linux #size
2494 days ago
- Jit@jit.aber
#Sickle ( https://github.com/najoshi/sickle ) to #trim #reads using a 20-Phred quality threshold
2489 days ago
- Jit@jit.aber
#Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )
2489 days ago
- Jit@jit.aber
Get the reads in fastq file: awk '{s++}END{print s/4}' file.fastq #reads #count #ngs #fastq
2368 days ago
- Jit@jit.aber
#Error filtering, pair assembly and error #correction for next-generation sequencing #reads https://academic.oup.com/bioinformatics/article/31/21/3476/194979
2340 days ago