Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_rever...2941 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enab...2928 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds...the concept of coverage plots and aims to assist (amongst others) in quality control o...2906 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving ex...guage in itself and is used more often to manipulate NGS data as compared to the other...2873 days ago
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BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and e...is a challenging and time consuming process for most NGS alignment programs. Large ins...o 20 times faster and 25% more accurate than popular NGS alignment programs when proce...2698 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal...or more assemblies in order to enhance contiguity and correctness of both. GAM-NGS does not rely on global align...2693 days ago