Results for "structural and sequence variation"
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Samtools is a suite of programs for interacting with high-throughput sequencing data. It consists o...ng SAM/BAM/CRAM formatBCFtoolsReading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence...2618 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® da...ware categories: De novo assembly Structural Variations Detection Reference-based alignment Consensus and vari...alysis Epigenetic base modifications and methylation Barcoding Genome Brow...2618 days ago
- SNPGenie is a Perl script for estimating evolutionary parameters, mainly from pool...h variants called relative to a single reference sequence (one sequence in one FASTA file). Just run...directory containing the necessary input files, and we ta...
2603 days ago
- JSON (JavaScript Object Notation) is a lightweight data-inte.... It is easy for humans to read and write. It is easy for machines to parse and generate. It is based on a su...Java, JavaScript, Perl, Python, and many others. These properties make...an array, vector, list, or sequence....
2598 days ago
- High throughput sequencing (HTS) technologies are being applied to a wi...organisms, for which little previous sequence information is available...urse addresses the specific strengths and weaknesses of alternative HTS tech...mputational resources needed for HTS, and how t...
2597 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads...reads include many insertions and deletions, and comparatively...tion, a larger portion of the sequence of PacBio reads is usable for...gion of similarity with other sequences, for aligning them to the co...2592 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guid...u through the typical steps of metagenome assembly and binning. The Tutorial Data Se...AT Binning Classification Kraken Taxonomic Sequence...2584 days ago
- DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST so...protein-protein search as well as DNA-protein search on short reads and longer sequences...
2575 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome each sequences comes from, which gene it r...ow that you have to align the sequences to the reference sequence. T...NA-seq data are BWA and Bowtie for DNA-Seq data and ...
2570 days ago
- FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a si...te to bundle a FASTA sequence and its q...
2569 days ago
