Results for "structural and sequence variation"
Top-level pages
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodi...Continuous Integration tools and techniques in Bioinformatics....-talk.de/ Tool for filtering sequence variants in VCF files. Networ...atabase of annotations aboute sequence variants with clinically rele...3757 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage ALF A Simulation...ggLib is a C++/Python library and program package for evolutionary g...a C++ program that simulates sequence-like data over large genomic...om/p/proteinevolver/QMSim QTL and Marke...3737 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Protein...edundant and a non-redundant (sequence identity lower than 25%) versio...ies proteins that share local structural similarities with the query protein and generates structure-based alignmen...a set of 215 highly conserved structura...3744 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amount...nt ++$a." $_" if /./' #Number and print only non-empty lines in...uo;g”,”c”)[rand 4] } 1..20'#Generates a 20 nucleot.../2013/04/05/split-multi-fasta-sequence-...3628 days ago
Next generation sequencing in R or bioconductor environment
...ced environment for efficient sequence management and analysis in R. It contains many speed and memory effective string conta...ied to any ranked list of DNA sequences. Documentation rGADEM: Do...control, filtering, parsing, and manipulation functionality for sho...des functions to retrieve the sequences...3625 days ago
Commercial and public next-gen-seq (NGS) software
...Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-g...utative single nucleotide and structural variation. From the Sanger Centre. MapV...jiangh/SeqMap/) - work like ELand, can do 3 or more bp mismatches and...3519 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This i...p that allows for the opening and analysis of DNA sequencing files - ab1. It includes handy tools such as "Reverse Compl...quencing data including small variations, copy number variations (CNV...o web services access to SGD, and then for even more details provides...3542 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad...aboratory, Jorhat SERC, M - Structural Engineering Research C...re for Mathematical Modelling and Computer Simulation, Bangalor...(W. B.) · Central Inland Capture Fisheries Research In...2571 days ago
Software packages for next gen sequence analysis
...Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-g...Software for Next Generation sequence assembly of Illumina, Roche FLX and Sanger data integrating with Lasergene Sequence Analysis software for ad...3243 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to al...ues that are conserved due to structural restraints from those...ints. Ligand Binding Sites 3DLiga...ructure prediction to provide structural models of the binding site....2202 days ago
