Results for "structure prediction"
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Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.2826 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of...the ab initio results. Weak conservation of Start codons will lead to wrong prediction of initial exons in most case...
2822 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic id...count by 500 genes (10% of previously annotated genes) and refining the gene structure...2747 days ago
- Gene finding in eukaryotic genomes is notorio...e of species. GeneMark-ET is a gene prediction tool that incorporates RNA-Se...bsequently generates ab initio gene predictions. AUGUSTUS is a gene finder t...ew combined tool for automatic gene prediction. http://www.ncbi.nlm.nih.gov...
1964 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-...onsensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure....
2808 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression,...t summaries or other results that are returned in structured...2768 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing re...equencing data analysis, including read alignment, de novo assembly, SNP and structure...
2753 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions..., and some of the later scripts take advantage of this predictable directory structure.
2752 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements...In order to run the included tools (ex hal2maf) in the submodules/ directory structure,...
2678 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for population inference. A GUI is a...wnload from the Downloads page. FineSTRUCTURE R scripts, a facility for exp...terpret the results of ADMIXTURE and STRUCTURE-...2651 days ago
