BOL: Results for "succinct"

Results for "succinct"

- Jit@jit.aber
LoRDEC: a hybrid error correction program for long, PacBio reads
...vertebrate species, on a usual computing server, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph (DBG) represe...
2595 days ago
- Jit@jit.aber
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
MEGAHIT is a single node assembler for large and complex metagenomics NGS reads, such as soil. It makes use of succinct de Bruijn graph (SdBG) to achieve low memory assembly....
2012 days ago
- Jit@jit.aber
VG: variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods
Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which are labeled b...
1572 days ago
- Abhimanyu Singh@abhimanyu
odgi: optimized dynamic genome/graph implementation
odgi provides an efficient and succinct dynamic DNA sequence graph model, as well as a host of algorithms that allow the use of such graphs in bioinformatic analyses. Careful enc...
836 days ago