Linux command line exercises for NGS data processing
...cessing Workflow. In Linux, we use a shell that is a program that takes your commands from the keyboard and gives them to the operating system. Most Linux systems utilize Bourne Again SHell (...2868 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...and a reduced dispersal matrix describing migration only among the connected sub-populations. This offers a substantial gain in computing time and system memory when simulating very l...2767 days ago
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Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...n the experimentally verified Ecogene data set (except those containing introns). It possesses a very sophisticated ribosomal binding site scoring system that enables it to locate the...2678 days ago
Metagenomics assembly workshop !!
...luation Read Mapping MetaQUAST Binning MaxBin Binning MetaBAT Binning Classification Kraken Taxonomic Sequence Classification System Next &n...2568 days ago
GeneProf: analysis of high-throughput sequencing experiment
...internet connection -- no need to install software! (cp. Section 'System Requirements'). Analysis wiz...;Medical Research Council and the EU Framework 7 Project "EuroSyStem".2490 days ago
Perlbrew: admin-free perl installation management tool.
...release note: Release 0.79. Copy & Paste this line into your terminal: \curl -L https://install.perlbrew.pl | bash Or, if your system does not have curl but someth...2483 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To date, the main application of Moss has been in detecting plagiarism i...2333 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on...2477 days ago