INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2345 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ntage of multi-core processors and uses a small RAM footprint, Ready to be used on desktop computer, cluster, cloud as well as within distributed system running Hadoop. https://pl...2341 days ago
Mobyle: a new full web bioinformatics framework
...It embeds simple yet powerful data management features that allow the user to reproduce analyses and to combine tools using a hierarchical typing system. Mobyle offers invocation of...2304 days ago
Frontend: Perl Web framework documentation - Andrej Sali Lab
...pload their input files, start a job, display a list of all jobs in the system, and get back job results. Th...s using a set of CGI scripts that are set up automatically by the build system.2303 days ago
karyoploteR: plot whole genomes with arbitrary data
...package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and does not depend on other...1945 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a...2277 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary na...2273 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on...2239 days ago
MITObim - mitochondrial baiting and iterative mapping
...ITObim and I encorage you to give them a try with the testdata that comes with this Repo, just to make sure everything is running smoothly on your system. It'll only take a few minute...2183 days ago
GLEAN: an unsupervised learning system to integrate disparate sources of gene structure evidence
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.2158 days ago