BOL: Results for "target"

Results for "target"

- Jit@jit.aber
#Target 4 and #HSPS 1 with #blast $ blastn -task megablast -query brkSeq.fa -db myDBAvaga -evalue 1e-5 -num_threads 1 -max_target_seqs 4 -max_hsps 1 -outfmt '6' -out output
Tags: Target, HSPS, blast
2537 days ago
- Jit@jit.aber
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a distribution of proportion of bases covered at or above...
Tags: mosdepth, fast, BAM, CRAM, depth, calculation, WGS, exome, target, sequencing
1624 days ago
- Jit@jit.aber
cisMuton: caller that detects SNVs/indels by comparing target (foreground) and control (background) samples
cisMuton is a caller that detects SNVs/indels by comparing target (foreground) and control (background) samples. cisMuton calls mutations from target capture regions, which are defined by the overlapping regions of ${GROUP}.target.bed and ${GROUP}.gene.bed. Please read the Q...
Tags: caller, detects, SNVs, indels, comparing, target, foreground, control, background, samples
1538 days ago